SKILLS
● Extensive programming experience including R (5 years), Python (4 years), Java (2 years), MySQL/PostgreSQL(1 year), SAS (1 year), Bash/sh scripting
● Operating systems: Mac OSX, Linux/SGE cluster
● Cloud Computing: Amazon Web Service(AWS), StarCluster, CfnCluster
● Sequence Analysis Tools: BWA, Bowtie, ClustalW/X, RDP Classifier, Samtools, Bedtools, Picard
● Version Control: GitHub, BitBucket, SourceTree
● Agile software development using JIRA/Stash(Atlassian)
● RESTfull APIs: Illumina Basespace and Torrent Server via python SDK, GenoLogics LIMS
● NGS Pipeline Automation: Luigi/spotify, Airflow/Airbnb,[login to view URL], GenoLogics LIMS integration
● GWAS Analysis Tools: PLINK, METAL, MANTRA, FAST
● Wet lab skills: DNA/RNA sequencing library preparation on Ion Torrent ®PGM